PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G223400.1
Common NameB456_002G223400, LOC105787089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 239aa    MW: 26673 Da    PI: 7.9914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G223400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-053052123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C  C+k+F++ + L  H++ H
  Gorai.002G223400.1 30 FVCYRCPKRFTSTYALGGHQNAH 52
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-42856IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-52857No hitNo description
PROSITE profilePS5015711.0323057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLGNASSAET SNPITPSVSS ETSQEITHPF VCYRCPKRFT STYALGGHQN AHKKERNEEL  60
RLYNERRLAL SRQSTVPPDG RAKTKRALAV LTNQSSTPSY GPMVQFLPVV PLPGSMCMYA  120
HPKSLVFVPA GFEYGQTRAG LNGKEVPYEG SHRENEMHHP YNRPLDIKPM AMKLYPNEER  180
VFWPKAKEDN GCSKEYYSVS ATNNVGPHGE ALINESREDD DADKKSSKVE ELDLTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468990.11e-180PREDICTED: uncharacterized protein LOC105787089
TrEMBLA0A0D2QAH11e-180A0A0D2QAH1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1997845
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]